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Subject: NEJM -- Chromosome 6p22 Locus Associated with Clinically Aggressive Neuroblastoma
Date: Thu, 8 May 2008 10:43:01 +0200
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<P>
<DIV align=3Dcenter><B><FONT face=3D"Arial, Helvetica, sans-serif"=20
size=3D+2>Chromosome 6p22 Locus Associated with Clinically Aggressive=20
Neuroblastoma</FONT></B><BR></DIV><!-- AUTHOR_DISPLAY -->
<CENTER><FONT size=3D+1><I>John M. Maris, M.D., Yael P. Mosse, M.D., =
Jonathan P.=20
Bradfield, B.S., Cuiping Hou, B.S., Stefano Monni, Ph.D., Richard H. =
Scott,=20
M.B., B.S., Shahab Asgharzadeh, M.D., Edward F. Attiyeh, M.D., Sharon J. =
Diskin,=20
Ph.D., Marci Laudenslager, B.S., Cynthia Winter, B.A., Kristina A. Cole, =
M.D.,=20
Ph.D., Joseph T. Glessner, M.S., Cecilia Kim, B.A., Edward C. =
Frackelton, B.A.,=20
Tracy Casalunovo, M.S., Andrew W. Eckert, M.S., Mario Capasso, Ph.D., =
Eric F.=20
Rappaport, Ph.D., Carmel McConville, Ph.D., Wendy B. London, Ph.D., =
Robert C.=20
Seeger, M.D., Nazneen Rahman, M.D., Ph.D., Marcella Devoto, Ph.D., =
Struan F.A.=20
Grant, Ph.D., Hongzhe Li, Ph.D., and Hakon Hakonarson, M.D., Ph.D.=20
</I></FONT></CENTER><!-- AUTHOR_DISPLAY -->
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content box2 --><!-- TEXT --><!-- <CENTER><H2><FONT FACE=3D"arial, =
helvetica">=0A=
Chromosome 6p22 Locus Associated with Clinically Aggressive =
Neuroblastoma</FONT></H2> </CENTER> --><!-- <CENTER><I>=0A=
</NOBR><NOBR>John M. Maris, M.D.</NOBR>, =0A=
<NOBR>Yael P. Mosse, M.D.</NOBR>, =0A=
<NOBR>Jonathan P. Bradfield, B.S.</NOBR>, =0A=
<NOBR>Cuiping Hou, B.S.</NOBR>, =0A=
<NOBR>Stefano Monni, Ph.D.</NOBR>, =0A=
<NOBR>Richard H. Scott, M.B., B.S.</NOBR>, =0A=
<NOBR>Shahab Asgharzadeh, M.D.</NOBR>, =0A=
<NOBR>Edward F. Attiyeh, M.D.</NOBR>, =0A=
<NOBR>Sharon J. Diskin, Ph.D.</NOBR>, =0A=
<NOBR>Marci Laudenslager, B.S.</NOBR>, =0A=
<NOBR>Cynthia Winter, B.A.</NOBR>, =0A=
<NOBR>Kristina A. Cole, M.D., Ph.D.</NOBR>, =0A=
<NOBR>Joseph T. Glessner, M.S.</NOBR>, =0A=
<NOBR>Cecilia Kim, B.A.</NOBR>, =0A=
<NOBR>Edward C. Frackelton, B.A.</NOBR>, =0A=
<NOBR>Tracy Casalunovo, M.S.</NOBR>, =0A=
<NOBR>Andrew W. Eckert, M.S.</NOBR>, =0A=
<NOBR>Mario Capasso, Ph.D.</NOBR>, =0A=
<NOBR>Eric F. Rappaport, Ph.D.</NOBR>, =0A=
<NOBR>Carmel McConville, Ph.D.</NOBR>, =0A=
<NOBR>Wendy B. London, Ph.D.</NOBR>, =0A=
<NOBR>Robert C. Seeger, M.D.</NOBR>, =0A=
<NOBR>Nazneen Rahman, M.D., Ph.D.</NOBR>, =0A=
<NOBR>Marcella Devoto, Ph.D.</NOBR>, =0A=
<NOBR>Struan F.A. Grant, Ph.D.</NOBR>, =0A=
<NOBR>Hongzhe Li, Ph.D.</NOBR></STRONG>, and =0A=
<NOBR>Hakon Hakonarson, M.D., Ph.D.</NOBR>=0A=
</I></CENTER><P>=0A=
 --><FONT=20
face=3D"arial, helvetica" size=3D+1><STRONG>ABSTRACT</STRONG></FONT>
<P><FONT face=3D"arial, helvetica"><I>Background</I> Neuroblastoma is a =
malignant=20
condition of the developing<SUP> </SUP>sympathetic nervous system that =
most=20
commonly affects young<SUP> </SUP>children and is often lethal. Its =
cause is not=20
known.<SUP> </SUP>
<P><I>Methods</I> We performed a genomewide association study by =
first<SUP>=20
</SUP>genotyping blood DNA samples from 1032 patients with =
neuroblastoma<SUP>=20
</SUP>and 2043 control subjects of European descent using the =
Illumina<SUP>=20
</SUP>HumanHap550 BeadChip. Samples from three independent groups<SUP> =
</SUP>of=20
patients with neuroblastoma (a total of 720 patients) and<SUP> =
</SUP>2128=20
control subjects were then genotyped to replicate significant<SUP>=20
</SUP>associations.<SUP> </SUP>
<P><I>Results</I> We observed a significant association between=20
neuroblastoma<SUP> </SUP>and the common minor alleles of three =
consecutive=20
single-nucleotide<SUP> </SUP>polymorphisms (SNPs) at chromosome band =
6p22 and=20
containing<SUP> </SUP>the predicted genes <I>FLJ22536</I> and =
<I>FLJ44180</I>=20
(P=3D1.71<FONT face=3Darial,helvetica>x</FONT>10<SUP>=969</SUP><SUP> =
</SUP>to=20
7.01<FONT face=3Darial,helvetica>x</FONT>10<SUP>=9610</SUP>; allelic =
odds ratio,=20
1.39 to 1.40). Homozygosity<SUP> </SUP>for the at-risk G allele of the =
most=20
significantly associated<SUP> </SUP>SNP, rs6939340, resulted in an =
increased=20
likelihood of the development<SUP> </SUP>of neuroblastoma (odds ratio, =
1.97; 95%=20
confidence interval,<SUP> </SUP>1.58 to 2.45). Subsequent genotyping of =
the=20
three 6p22 SNPs<SUP> </SUP>in three independent case series confirmed =
our=20
observation of<SUP> </SUP>an association (P=3D9.33<FONT=20
face=3Darial,helvetica>x</FONT>10<SUP>=9615</SUP> at rs6939340 for joint =

analysis).<SUP> </SUP>Patients with neuroblastoma who were homozygous =
for the=20
risk<SUP> </SUP>alleles at 6p22 were more likely to have metastatic =
(stage=20
4)<SUP> </SUP>disease (P=3D0.02), amplification of the <I>MYCN</I> =
oncogene in=20
the<SUP> </SUP>tumor cells (P=3D0.006), and disease relapse =
(P=3D0.01).<SUP> </SUP>
<P><I>Conclusions</I> A common genetic variation at chromosome band =
6p22<SUP>=20
</SUP>is associated with susceptibility to neuroblastoma.<SUP> </SUP>
<P></FONT>
<HR>
Despite marked improvements in the cure rates for many childhood<SUP>=20
</SUP>cancers, neuroblastoma remains an important clinical problem,<SUP> =

</SUP>accounting for 15% of the deaths attributable to malignant =
conditions<SUP>=20
</SUP>in children.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R1"><SUP>1=
</SUP></A>=20
It is the most common solid cancer of early childhood,<SUP> </SUP>and=20
approximately half of all patients with neuroblastoma present<SUP> =
</SUP>with=20
widely disseminated disease that is often refractory to<SUP> =
</SUP>intensive=20
chemoradiotherapy. Cure rates among these high-risk<SUP> </SUP>patients =
remain=20
less than 40%, despite dramatic increases in<SUP> </SUP>the intensity of =

chemoradiotherapy, and survivors often have<SUP> </SUP>serious lifelong=20
coexisting conditions.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R2"><SUP>2=
</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R3"><SUP>3=
</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R4"><SUP>4=
</SUP></A><SUP>=20
</SUP>
<P>Somatically acquired genomic aberrations in neuroblastoma are<SUP> =
</SUP>of=20
fundamental importance for predicting the tumor phenotype<SUP> </SUP>in=20
patients.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R1"><SUP>1=
</SUP></A>=20
Tumors with amplification of the <I>MYCN</I> oncogene<SUP> </SUP>or =
deletions of=20
the chromosome arms 1p, 11q, or both, typically<SUP> </SUP>are =
metastatic at=20
diagnosis and resistant to therapy.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R5"><SUP>5=
</SUP></A>=20
Conversely,<SUP> </SUP>tumors showing no structural chromosomal changes =
but=20
hyperdiploidy<SUP> </SUP>due to whole-chromosome gains are more easily =
cured and=20
may<SUP> </SUP>even spontaneously regress.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R6"><SUP>6=
</SUP></A><SUP>=20
</SUP>
<P>Neuroblastoma is an embryonal cancer; it is thought to arise<SUP> =
</SUP>from=20
partially committed primordial cells during fetal or early<SUP> =
</SUP>childhood=20
development. Despite the wealth of knowledge about<SUP> =
</SUP>somatically=20
acquired genomic aberrations that correlate with<SUP> </SUP>tumor =
phenotype,=20
little is known about the events that predispose<SUP> </SUP>to the =
development=20
of neuroblastoma. Epidemiologic studies have<SUP> </SUP>not identified a =
common=20
environmental exposure that influences<SUP> </SUP>susceptibility to=20
neuroblastoma,<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R7"><SUP>7=
</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R8"><SUP>8=
</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R9"><SUP>9=
</SUP></A>=20
and genetic studies of<SUP> </SUP>hereditary disease have been hampered =
by the=20
rarity of the condition<SUP> </SUP>and the small size of pedigrees due =
to the=20
lethality of neuroblastoma<SUP> </SUP>in early childhood.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R10"><SUP>=
10</SUP></A>=20
A family history of neuroblastoma is obtained<SUP> </SUP>in only about =
1% of=20
patients,<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R11"><SUP>=
11</SUP></A>=20
and studies of such families<SUP> </SUP>suggest locus heterogeneity; no =
commonly=20
mutated gene has been<SUP> </SUP>identified.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R12"><SUP>=
12</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R13"><SUP>=
13</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R14"><SUP>=
14</SUP></A>=20
We therefore hypothesized that neuroblastomas<SUP> </SUP>arise from =
relatively=20
common DNA variations that predispose<SUP> </SUP>to an increased risk of =

neuroblastic malignant transformation.<SUP> </SUP>
<P><FONT face=3D"arial, helvetica" =
size=3D+1><STRONG>Methods</STRONG></FONT>
<P><STRONG>Subjects</STRONG>
<P>For genomewide genotyping, case subjects were defined as =
children<SUP>=20
</SUP>with a diagnosis of neuroblastoma or ganglioneuroblastoma and<SUP> =

</SUP>registered through the Children's Oncology Group. The blood<SUP>=20
</SUP>samples from the patients with neuroblastoma were identified<SUP>=20
</SUP>through the neuroblastoma biorepository of the Children's =
Oncology<SUP>=20
</SUP>Group for specimen collection at the time of diagnosis. The<SUP>=20
</SUP>majority of specimens were annotated with clinical and =
genomic<SUP>=20
</SUP>information that included the patient's age at diagnosis, =
site<SUP>=20
</SUP>of tumor origin, disease stage according to the International<SUP> =

</SUP>Neuroblastoma Staging System,<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R15"><SUP>=
15</SUP></A>=20
International Neuroblastoma<SUP> </SUP>Pathology Classification,<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R16"><SUP>=
16</SUP></A>=20
<I>MYCN</I> oncogene copy number,<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R17"><SUP>=
17</SUP></A>=20
DNA<SUP> </SUP>index (i.e., ploidy status),<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R18"><SUP>=
18</SUP></A>=20
registration in a clinical trial<SUP> </SUP>or clinical trials, =
event-free and=20
overall survival, second<SUP> </SUP>tumors, and any associated =
conditions (e.g.,=20
congenital abnormalities).<SUP> </SUP>
<P>The eligibility criterion for genomewide genotyping was the<SUP>=20
</SUP>availability of 1.5 =B5g of DNA of high quality from a =
tumor-free<SUP>=20
</SUP>source such as peripheral blood or bone marrow mononuclear =
cells<SUP>=20
</SUP>that were uninvolved with a tumor. Because neuroblastoma in<SUP> =
</SUP>the=20
United States most often occurs in persons of European descent,<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R19"><SUP>=
19</SUP></A><SUP>=20
</SUP>we limited our initial analyses to the DNA samples from the<SUP>=20
</SUP>blood of such persons to minimize genetic variability. We =
randomly<SUP>=20
</SUP>divided subjects with samples dedicated to genomewide testing<SUP> =

</SUP>into a group of 1251 case subjects for the discovery phase =
and<SUP>=20
</SUP>a group of 409 case subjects for an initial replication =
phase.<SUP> </SUP>
<P>Control subjects were recruited from the Philadelphia region<SUP>=20
</SUP>through the Children's Hospital of Philadelphia Health Care<SUP>=20
</SUP>Network, including four primary care clinics and several =
group<SUP>=20
</SUP>practices and outpatient practices that included well-child<SUP>=20
</SUP>visits. Eligibility criteria for control subjects were =
European<SUP>=20
</SUP>ancestry as determined by self-report or parental report,=20
availability<SUP> </SUP>of 1.5 =B5g of high- quality DNA from =
peripheral-blood=20
mononuclear<SUP> </SUP>cells, and no serious underlying medical =
disorder,=20
including<SUP> </SUP>cancer. The median age of the control subjects at =
the time=20
of<SUP> </SUP>sample collection was 10.0 years. We genotyped=20
single-nucleotide<SUP> </SUP>polymorphisms (SNPs) across the genomes of =
3414=20
control subjects<SUP> </SUP>and randomly assigned 2236 subjects to the =
discovery=20
phase and<SUP> </SUP>1178 to the initial replication phase.<SUP> </SUP>
<P>Two additional case series were used for the purpose of =
replication.<SUP>=20
</SUP>First, 252 randomly selected and unrelated patients with=20
neuroblastoma<SUP> </SUP>or ganglioneuroblastoma were recruited from =
pediatric=20
oncology<SUP> </SUP>centers in the United Kingdom either as part of a =
group of=20
patients<SUP> </SUP>who had received a diagnosis of neuroblastoma at the =

Birmingham<SUP> </SUP>Children's Hospital since 1992, through the =
Factors=20
Associated<SUP> </SUP>with Childhood Tumours study, or from the Tumour =
and=20
Leukaemia<SUP> </SUP>Bank of the Childhood Cancer and Leukaemia Group. A =
total=20
of<SUP> </SUP>788 samples from control subjects were obtained from the =
1958<SUP>=20
</SUP>Birth Cohort collection, an ongoing follow-up study of all =
persons<SUP>=20
</SUP>born in Britain during 1 week in 1958, including a recent =
biomedical<SUP>=20
</SUP>assessment during the period from 2002 through 2004; during<SUP>=20
</SUP>this assessment, blood samples and written informed consent<SUP>=20
</SUP>were obtained for the creation of a genetic resource (the =
National<SUP>=20
</SUP>Child Developmental Study, <A=20
href=3D"http://www.cls.ioe.ac.uk/">www.cls.ioe.ac.uk/</A>). All case =
subjects<SUP>=20
</SUP>and control subjects were from the United Kingdom, and =
subjects<SUP>=20
</SUP>known to be of non-European ancestry were excluded. The final<SUP> =

</SUP>replication group of 59 unrelated persons with high-risk=20
neuroblastoma<SUP> </SUP>were recruited from the U.S.-based Children's =
Cancer=20
Group protocols<SUP> </SUP>from the 1990s.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R2"><SUP>2=
</SUP></A>=20
Control DNA samples from the Children's Cancer<SUP> </SUP>Group were =
derived=20
from buccal swabs (obtained for the creation<SUP> </SUP>of an anonymized =
genetic=20
resource) from 162 unrelated persons<SUP> </SUP>of European descent =
living in=20
the Los Angeles area during the<SUP> </SUP>period from 2000 through =
2001.<SUP>=20
</SUP>
<P>Written informed consent was obtained from all participants,<SUP> =
</SUP>and=20
the study was approved by each participating center's institutional<SUP> =

</SUP>review board as well as by the Scientific Council and the=20
Neuroblastoma<SUP> </SUP>Disease Committee of the Children's Oncology =
Group and=20
the Cancer<SUP> </SUP>Therapy Evaluation Program at the National Cancer=20
Institute.<SUP> </SUP>
<P><STRONG>Genotyping</STRONG>
<P>Details of methods for genomewide genotyping have been described<SUP> =

</SUP>elsewhere.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R20"><SUP>=
20</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R21"><SUP>=
21</SUP></A>=20
Descriptions of these methods, along with methods<SUP> </SUP>for =
replication=20
genotyping by means of polymerase chain reaction=96based<SUP> =
</SUP>allelic=20
discrimination assays, are included in the <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
Appendix</A>,<SUP> </SUP>available with the full text of this article at =

www.nejm.org.<SUP> </SUP>
<P><STRONG>Statistical Analysis</STRONG>
<P>Genomewide genotyping data from an initial 1251 patients with<SUP>=20
</SUP>neuroblastoma and 2236 disease-free control subjects in the<SUP>=20
</SUP>discovery phase were filtered on the basis of prespecified=20
quality-control<SUP> </SUP>measures. Individual SNPs were excluded from =
further=20
analysis<SUP> </SUP>if they showed deviation from the Hardy=96Weinberg=20
equilibrium<SUP> </SUP>with a P value of less than 0.001, an individual =
SNP=20
genotype<SUP> </SUP>yield of less than 98%, or a minor allele frequency =
of=20
less<SUP> </SUP>than 5%. This filtering resulted in the use of 464,934 =
SNPs<SUP>=20
</SUP>in the subsequent analyses. A total of 33 samples (from 23 =
case<SUP>=20
</SUP>subjects and 10 control subjects) had genotype yields of less<SUP> =

</SUP>than 90% and were removed. Because the case samples were =
accrued<SUP>=20
</SUP>nationwide, whereas the control set was recruited locally in<SUP>=20
</SUP>Philadelphia, we performed principal-components analyses to<SUP>=20
</SUP>identify outlier samples to reduce the effects of population<SUP>=20
</SUP>stratification.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R22"><SUP>=
22</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R23"><SUP>=
23</SUP></A>=20
These analyses resulted in the removal<SUP> </SUP>of 379 samples (from =
196 case=20
subjects and 183 control subjects),<SUP> </SUP>resulting in 1032 =
patients and=20
2043 control subjects for our<SUP> </SUP>discovery-phase case series. =
Evaluation=20
of these 3075 subjects<SUP> </SUP>with the use of ancestry informative =
markers=20
available on the<SUP> </SUP>HumanHap550 BeadChip indicated European =
ancestry in=20
all but<SUP> </SUP>2 subjects; these 2 subjects remained in the =
analysis.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R24"><SUP>=
24</SUP></A>=20
The<SUP> </SUP>patients with neuroblastoma were representative of the=20
expected<SUP> </SUP>distribution of clinical and biologic covariates as=20
observed<SUP> </SUP>in patients with neuroblastoma in the general =
population=20
(Table<SUP> </SUP>S1 in the <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
Appendix</A>).<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R1"><SUP>1=
</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R19"><SUP>=
19</SUP></A><SUP>=20
</SUP>
<P>The primary statistical tests for association in the =
discovery-phase<SUP>=20
</SUP>case series were carried out with the use of the PLINK =
software<SUP>=20
</SUP>package.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R25"><SUP>=
25</SUP></A>=20
We conservatively set 1.0<FONT =
face=3Darial,helvetica>x</FONT>10<SUP>=967</SUP> as=20
the threshold<SUP> </SUP>for genomewide significance, on the basis of =
the fact=20
that slightly<SUP> </SUP>less than 500,000 SNPs were used in the =
analysis=20
(0.05=F7500,000=3D1.0<FONT =
face=3Darial,helvetica>x</FONT>10<SUP>=967</SUP>).<SUP>=20
</SUP>The single-marker analyses for the genomewide data were =
carried<SUP>=20
</SUP>out with the use of the chi-square test on the basis of =
differences<SUP>=20
</SUP>in allele counts between 1032 case subjects and 2043 control<SUP>=20
</SUP>subjects and the Cochran=96Armitage test for trends on =
genotype<SUP>=20
</SUP>frequencies. Allelic odds ratios and the corresponding 95% =
confidence<SUP>=20
</SUP>intervals were calculated for the association analyses. In =
addition,<SUP>=20
</SUP>to further control for the potential confounding influence of<SUP> =

</SUP>population stratification, we performed association analyses<SUP>=20
</SUP>after correction for substructure based on a =
principal-components<SUP>=20
</SUP>analysis as implemented in Eigenstrat.<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R22"><SUP>=
22</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R23"><SUP>=
23</SUP></A>=20
For each SNP, we<SUP> </SUP>used the default settings within the program =
and=20
performed a<SUP> </SUP>modified Cochran=96Armitage trend test adjusting =
for=20
the<SUP> </SUP>top five principal components,<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R22"><SUP>=
22</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R23"><SUP>=
23</SUP></A>=20
and we report the result<SUP> </SUP>as the Eigenstrat P value. Fig. S1 =
in the <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
Appendix</A><SUP> </SUP>shows quantile=96quantile plots before and after =

correction.<SUP> </SUP>
<P>Of the 1032 patients included in the discovery-phase case =
series,<SUP>=20
</SUP>clinical and biologic covariate data obtained at diagnosis =
were<SUP>=20
</SUP>available for most (Table S1 in the <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
Appendix</A>).<SUP> </SUP>Complete outcome data were available for 883 =
patients=20
(85.6%),<SUP> </SUP>with a median follow-up interval of 4.02 years for=20
patients<SUP> </SUP>without an event. Association analyses of chromosome =
6p22=20
SNPs<SUP> </SUP>with clinical characteristics were performed with the=20
chi-square<SUP> </SUP>test on allele and genotype counts. These analyses =
were=20
also<SUP> </SUP>performed for outcome by comparing Kaplan=96Meier =
survival<SUP>=20
</SUP>curves by means of the log-rank test in a pairwise fashion.<SUP> =
</SUP>
<P><FONT face=3D"arial, helvetica" =
size=3D+1><STRONG>Results</STRONG></FONT>
<P>To identify sequence variants that are associated with =
susceptibility<SUP>=20
</SUP>to the development of neuroblastoma, we compared =
single-marker<SUP>=20
</SUP>allele and genotype frequencies in our discovery-phase case<SUP>=20
</SUP>series, using statistics based on chi-square analysis and the<SUP> =

</SUP>Cochran=96Armitage trend test. The Eigenstrat-corrected<SUP> =
</SUP>summary=20
statistics for the full data set are available in the<SUP> =
</SUP>repository of=20
the National Institutes of Health Genotype and<SUP> </SUP>Phenotype =
database=20
(dbGAP; <A=20
href=3D"http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_=
id=3Dphs000124.v1.p1">www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi=
?study_id=3Dphs000124.v1.p1</A>)<SUP>=20
</SUP>(accession number, phs000124.v1.p1). The top three SNPs =
showing<SUP>=20
</SUP>a significant association to neuroblastoma were in close =
linkage<SUP>=20
</SUP>disequilibrium at chromosome 6p22 (rs6939340, rs4712653, and<SUP>=20
</SUP>rs9295536) yielding P values of 1.71<FONT=20
face=3Darial,helvetica>x</FONT>10<SUP>=969</SUP> to 7.01<FONT=20
face=3Darial,helvetica>x</FONT>10<SUP>=9610</SUP><SUP> </SUP>(allelic =
odds ratio,=20
1.39 to 1.40) (<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#F1">Figure=
 1</A>=20
and <A =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#T1">Table =

1</A>, and<SUP> </SUP>Table S2 in the <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
Appendix</A>). Two additional SNPs<SUP> </SUP>at chromosome 20p11 =
(rs3790171 and=20
rs7272481) showed genomewide<SUP> </SUP>significant single-marker P =
values, and=20
many others were very<SUP> </SUP>close to the genomewide significance =
threshold=20
(<A =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#F1">Figure=
=20
1</A>). However,<SUP> </SUP>only the chromosome 6 association-study =
results=20
retained genomewide<SUP> </SUP>significance after further correction for =

population substructure<SUP> </SUP>with the use of principal-components =
analyses=20
as implemented<SUP> </SUP>in Eigenstrat<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R22"><SUP>=
22</SUP></A><SUP>,</SUP><A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R23"><SUP>=
23</SUP></A>=20
(<A =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#T1">Table =

1</A>). The signal on chromosome 6 falls<SUP> </SUP>within a 94.2-kb=20
linkage-disequilibrium block containing the<SUP> </SUP>predicted =
overlapping=20
genes <I>FLJ22536</I> and <I>FLJ44180</I> (<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#F2">Figure=
=20
2</A>).<SUP> </SUP>
<P><A name=3DF1><!-- null --></A>
<TABLE cellSpacing=3D0 cellPadding=3D0>
  <TBODY>
  <TR bgColor=3D#e8e8d1>
    <TD>
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        <TBODY>
        <TR bgColor=3D#e8e8d1>
          <TD vAlign=3Dtop align=3Dmiddle bgColor=3D#ffffff><A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698v1/F1"><IMG=
=20
            height=3D102 alt=3D"Figure 1" hspace=3D10=20
            =
src=3D"http://content.nejm.org/content/vol0/issue2008/images/small/NEJMoa=
0708698f1.gif"=20
            width=3D128 vspace=3D5 border=3D2></A><BR><STRONG>View =
larger=20
            version</STRONG> (37K):<BR><NOBR><A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698v1/F1">[in =

            this window]</A><BR><A=20
            onmouseover=3D"window.status=3D'View figure in a separate =
window'; return true"=20
            onclick=3D"startTarget('F1', 590, 550); =
this.href=3D'/cgi/content-nw/full/NEJMoa0708698v1/F1'"=20
            =
href=3D"http://content.nejm.org/cgi/content-nw/full/NEJMoa0708698v1/F1"=20
            target=3DF1>[in a new window]</A><BR><A=20
            =
href=3D"http://content.nejm.org/cgi/powerpoint/NEJMoa0708698v1/F1"><IMG=20
            alt=3D"Get Slide"=20
            =
src=3D"http://content.nejm.org/icons/powerpoint/get_pp_slide_center.gif" =

            vspace=3D8 border=3D0></A><BR>&nbsp;</NOBR> </TD>
          <TD vAlign=3Dtop align=3Dleft><STRONG><B>Figure 1.</B> =
</STRONG>Results=20
            of the Discovery Phase of the Neuroblastoma Genomewide =
Association=20
            Study.
            <P>The y axis represents the level of significance for each=20
            single-nucleotide polymorphism (log-transformed P values) at =
the=20
            relative genomic position on each chromosome along the x =
axis from=20
            the short-arm terminus (left) to the long-arm terminus =
(right). The=20
            black line indicates the genomewide significance threshold.
            =
<P></P></TD></TR></TBODY></TABLE></TD></TR></TBODY></TABLE>&nbsp;<BR><A =
name=3DT1><!-- null --></A>
<TABLE cellSpacing=3D0 cellPadding=3D0>
  <TBODY>
  <TR bgColor=3D#e8e8d1>
    <TD>
      <TABLE cellSpacing=3D2 cellPadding=3D2>
        <TBODY>
        <TR bgColor=3D#e8e8d1>
          <TD vAlign=3Dtop align=3Dmiddle bgColor=3D#ffffff><STRONG>View =
this=20
            table:</STRONG><BR><NOBR><A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698v1/T1">[in =

            this window]</A><BR><A=20
            onmouseover=3D"window.status=3D'View figure in a separate =
window'; return true"=20
            onclick=3D"startTarget('T1', 950, 416); =
this.href=3D'/cgi/content-nw/full/NEJMoa0708698v1/T1'"=20
            =
href=3D"http://content.nejm.org/cgi/content-nw/full/NEJMoa0708698v1/T1"=20
            target=3DT1>[in a new window]</A><BR><A=20
            =
href=3D"http://content.nejm.org/cgi/powerpoint/NEJMoa0708698v1/T1"><IMG=20
            alt=3D"Get Slide"=20
            =
src=3D"http://content.nejm.org/icons/powerpoint/get_pp_slide_center.gif" =

            vspace=3D8 border=3D0></A><BR>&nbsp;</NOBR> </TD>
          <TD vAlign=3Dtop align=3Dleft><STRONG><B>Table 1.</B> =
</STRONG>Results=20
            of the Discovery Phase of a Neuroblastoma Genomewide =
Association=20
            Study for Case and Control Subjects.
            =
<P></P></TD></TR></TBODY></TABLE></TD></TR></TBODY></TABLE>&nbsp;<BR><A =
name=3DF2><!-- null --></A>
<TABLE cellSpacing=3D0 cellPadding=3D0>
  <TBODY>
  <TR bgColor=3D#e8e8d1>
    <TD>
      <TABLE cellSpacing=3D2 cellPadding=3D2>
        <TBODY>
        <TR bgColor=3D#e8e8d1>
          <TD vAlign=3Dtop align=3Dmiddle bgColor=3D#ffffff><A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698v1/F2"><IMG=
=20
            height=3D120 alt=3D"Figure 2" hspace=3D10=20
            =
src=3D"http://content.nejm.org/content/vol0/issue2008/images/small/NEJMoa=
0708698f2.gif"=20
            width=3D128 vspace=3D5 border=3D2></A><BR><STRONG>View =
larger=20
            version</STRONG> (24K):<BR><NOBR><A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698v1/F2">[in =

            this window]</A><BR><A=20
            onmouseover=3D"window.status=3D'View figure in a separate =
window'; return true"=20
            onclick=3D"startTarget('F2', 590, 613); =
this.href=3D'/cgi/content-nw/full/NEJMoa0708698v1/F2'"=20
            =
href=3D"http://content.nejm.org/cgi/content-nw/full/NEJMoa0708698v1/F2"=20
            target=3DF2>[in a new window]</A><BR><A=20
            =
href=3D"http://content.nejm.org/cgi/powerpoint/NEJMoa0708698v1/F2"><IMG=20
            alt=3D"Get Slide"=20
            =
src=3D"http://content.nejm.org/icons/powerpoint/get_pp_slide_center.gif" =

            vspace=3D8 border=3D0></A><BR>&nbsp;</NOBR> </TD>
          <TD vAlign=3Dtop align=3Dleft><STRONG><B>Figure 2.</B> =
</STRONG>Pairwise=20
            Linkage Disequilibrium (LD) Plot of the 6p22 Locus and =
Results of=20
            the Association Analyses for Regional Single-Nucleotide=20
            Polymorphisms (SNPs).
            <P>The diagram shows a 290.98-kb region from rs12207699 to=20
            rs9393266, with pairwise LD calculated from the =
discovery-phase case=20
            and control data sets combined (as measured by the LD =
coefficient=20
            D'). Individual SNP log-transformed P values are plotted in =
relation=20
            to the LD diagram, which was created with the use of =
Haploview=20
            software.<A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#R26"><SUP>=
26</SUP></A>=20
            The three SNPs showing a genomewide significant-association =
signal=20
            (red horizontal line) are annotated (r<SUP>2</SUP> was 0.873 =
for=20
            SNPs rs4712653 and rs9295536 and 0.731 for SNPs rs9295536 =
and=20
            rs6939340) and map within a 94.2-kb LD block, delimited by =
SNPs=20
            rs196051<!-- HIGHWIRE EXLINK_ID=3D"0:2008:NEJMoa0708698v1:1" =
VALUE=3D"rs196051" TYPEGUESS=3D"GEN" --><!-- /HIGHWIRE -->=20
            and rs10498705 (dashed vertical lines). All SNPs are also =
annotated=20
            to their relative positions on the physical map (based on =
the=20
            National Center for Biotechnology Information database, =
build 36),=20
            with predicted genes in the region shown (exons and =
transcribed=20
            sequences are indicated by solid vertical lines).
            =
<P></P></TD></TR></TBODY></TABLE></TD></TR></TBODY></TABLE>&nbsp;<BR>We =
next=20
sought to replicate the association signals of chromosomes<SUP> =
</SUP>6p22 and=20
20p11 in three separate pairings of patients with neuroblastoma<SUP> =
</SUP>and=20
control subjects. As shown in <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#T2">Table =
2</A>,=20
the risk alleles<SUP> </SUP>in chromosome 6 identified in the discovery =
phase=20
were also<SUP> </SUP>significantly overrepresented in all three groups =
of=20
patients<SUP> </SUP>with neuroblastoma as compared with control =
subjects,=20
yielding<SUP> </SUP>a combined P value and allelic odds ratio for the =
most=20
strongly<SUP> </SUP>associated SNP rs6939340 of 9.33<FONT=20
face=3Darial,helvetica>x</FONT>10<SUP>=9615</SUP> and 1.37, =
respectively<SUP>=20
</SUP>(95% confidence interval, 1.27 to 1.49). We did not observe<SUP>=20
</SUP>replication of the association between the alleles in =
chromosome<SUP>=20
</SUP>20 and neuroblastoma (identified in the discovery cohort) in<SUP>=20
</SUP>the three replication case series (Table S3 in the <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
Appendix</A>).<SUP> </SUP>
<P><A name=3DT2><!-- null --></A>
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    <TD>
      <TABLE cellSpacing=3D2 cellPadding=3D2>
        <TBODY>
        <TR bgColor=3D#e8e8d1>
          <TD vAlign=3Dtop align=3Dmiddle bgColor=3D#ffffff><STRONG>View =
this=20
            table:</STRONG><BR><NOBR><A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698v1/T2">[in =

            this window]</A><BR><A=20
            onmouseover=3D"window.status=3D'View figure in a separate =
window'; return true"=20
            onclick=3D"startTarget('T2', 950, 943); =
this.href=3D'/cgi/content-nw/full/NEJMoa0708698v1/T2'"=20
            =
href=3D"http://content.nejm.org/cgi/content-nw/full/NEJMoa0708698v1/T2"=20
            target=3DT2>[in a new window]</A><BR><A=20
            =
href=3D"http://content.nejm.org/cgi/powerpoint/NEJMoa0708698v1/T2"><IMG=20
            alt=3D"Get Slide"=20
            =
src=3D"http://content.nejm.org/icons/powerpoint/get_pp_slide_center.gif" =

            vspace=3D8 border=3D0></A><BR>&nbsp;</NOBR> </TD>
          <TD vAlign=3Dtop align=3Dleft><STRONG><B>Table 2.</B> =
</STRONG>Results=20
            of Replication Studies of the Chromosome 6 Association.
            =
<P></P></TD></TR></TBODY></TABLE></TD></TR></TBODY></TABLE>&nbsp;<BR>To=20
determine whether the three implicated SNPs at the chromosome<SUP> =
</SUP>6p22=20
locus were differentially associated with patient subgroups<SUP> =
</SUP>and=20
outcome, we analyzed their prevalence according to prognostically<SUP>=20
</SUP>relevant clinical and biologic covariates present at =
diagnosis<SUP>=20
</SUP>and survival rates among patients in the case series from the<SUP> =

</SUP>Children's Oncology Group. All three SNPs were associated =
with<SUP>=20
</SUP>a more malignant clinical presentation and aggressive disease<SUP> =

</SUP>course (<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#F3">Figure=
 3</A>).=20
Accordingly, tumors that were metastatic<SUP> </SUP>at diagnosis were =
more=20
likely to develop in patients with neuroblastoma<SUP> </SUP>who were =
homozygous=20
for the at-risk alleles (P=3D0.006, P=3D0.008,<SUP> </SUP>and P=3D0.024 =
for rs4712653,=20
rs9295536, and rs6939340, respectively),<SUP> </SUP>to have somatically =
acquired=20
amplification of the <I>MYCN</I> oncogene<SUP> </SUP>in tumor cells =
(P=3D0.002,=20
P=3D0.003, and P=3D0.006, respectively),<SUP> </SUP>and to have a =
high-risk=20
classification for the purposes of treatment<SUP> </SUP>stratification =
(P=3D0.002,=20
P=3D0.001, and P=3D0.011, respectively),<SUP> </SUP>as compared with =
patients with=20
neuroblastoma who were homozygous<SUP> </SUP>for the alleles that were =
not=20
associated with risk (Table S4<SUP> </SUP>and S5 in the <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
Appendix</A>). In addition, patients<SUP> </SUP>who were homozygous for =
the risk=20
alleles had a significantly<SUP> </SUP>decreased probability of =
event-free=20
survival (P=3D0.016 for SNP<SUP> </SUP>rs6939340) (Fig. S2 in the <A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
Appendix</A>). This association<SUP> </SUP>with more malignant disease =
may=20
explain why we were able to<SUP> </SUP>show replication of results in =
the=20
relatively small series of<SUP> </SUP>59 patients from the Children's =
Cancer=20
Group that consisted<SUP> </SUP>solely of high-risk patients (<A=20
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698#T2">Table =

2</A>).<SUP> </SUP>
<P><A name=3DF3><!-- null --></A>
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        <TR bgColor=3D#e8e8d1>
          <TD vAlign=3Dtop align=3Dmiddle bgColor=3D#ffffff><A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698v1/F3"><IMG=
=20
            height=3D128 alt=3D"Figure 3" hspace=3D10=20
            =
src=3D"http://content.nejm.org/content/vol0/issue2008/images/small/NEJMoa=
0708698f3.gif"=20
            width=3D61 vspace=3D5 border=3D2></A><BR><STRONG>View larger =

            version</STRONG> (16K):<BR><NOBR><A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698v1/F3">[in =

            this window]</A><BR><A=20
            onmouseover=3D"window.status=3D'View figure in a separate =
window'; return true"=20
            onclick=3D"startTarget('F3', 361, 640); =
this.href=3D'/cgi/content-nw/full/NEJMoa0708698v1/F3'"=20
            =
href=3D"http://content.nejm.org/cgi/content-nw/full/NEJMoa0708698v1/F3"=20
            target=3DF3>[in a new window]</A><BR><A=20
            =
href=3D"http://content.nejm.org/cgi/powerpoint/NEJMoa0708698v1/F3"><IMG=20
            alt=3D"Get Slide"=20
            =
src=3D"http://content.nejm.org/icons/powerpoint/get_pp_slide_center.gif" =

            vspace=3D8 border=3D0></A><BR>&nbsp;</NOBR> </TD>
          <TD vAlign=3Dtop align=3Dleft><STRONG><B>Figure 3.</B> =
</STRONG>Risk=20
            Alleles at Chromosome 6p22 Associated with a More Malignant=20
            Neuroblastoma Phenotype.
            <P>Frequency distributions of genotypes (homozygous G [GG],=20
            heterozygous AG, or homozygous A [AA]) of patients =
classified=20
            according to three clinical variables and of control =
subjects are=20
            shown for single-nucleotide polymorphism (SNP) rs6939340, =
along with=20
            P values of allelic tests between the clinical subgroups and =
between=20
            each of them and the controls. Similar results were obtained =
for=20
            SNPs rs4712653 and rs9295536. Specifically, patients =
assigned to a=20
            high-risk group (Panel A), with tumors that harbor =
<I>MYCN</I>=20
            amplification (Panel B), and with stage 4 disease (Panel C) =
were=20
            more likely to be homozygous for the risk allele C at =
rs4712653, A=20
            at rs9295536, and G at rs6939340 (see Tables S4 and S5 in =
the <A=20
            =
href=3D"http://content.nejm.org/cgi/content/full/NEJMoa0708698/DC1">Suppl=
ementary=20
            Appendix</A>).
            =
<P></P></TD></TR></TBODY></TABLE></TD></TR></TBODY></TABLE>&nbsp;<BR><FON=
T=20
face=3D"arial, helvetica" size=3D+1><STRONG>Discussion</STRONG></FONT>
<P>This study shows that the likelihood for malignant =
transformation<SUP>=20
</SUP>of developing neuroblasts is influenced by variants on =
chromosome<SUP>=20
</SUP>6p22. Associations between neuroblastoma and other loci may<SUP>=20
</SUP>come to light as we continue toward our goal of the =
genomewide<SUP>=20
</SUP>genotyping of DNA samples from 5000 patients with =
neuroblastoma.<SUP>=20
</SUP>Our data provide support, on a preliminary level, for the =
"common<SUP>=20
</SUP>variant, common disease" model for neuroblastoma (i.e., the<SUP>=20
</SUP>interaction of multiple relatively common genetic variations<SUP> =
</SUP>in=20
the developing neuroblast may predispose toward the development<SUP> =
</SUP>of=20
the disease).<SUP> </SUP>
<P>The motivation for this large and ongoing study was the paucity<SUP> =
</SUP>of=20
information on neuroblastoma tumorigenesis. Our study provides<SUP>=20
</SUP>proof-of-concept results for a genomewide-association =
approach<SUP>=20
</SUP>to neuroblastoma and identifies new candidate susceptibility<SUP>=20
</SUP>genes, although little is known about these genes. =
<I>FLJ22536</I><SUP>=20
</SUP>has multiple predicted isoforms and contains a potential =
epidermal<SUP>=20
</SUP>growth factor=96like domain. The <I>FLJ44180</I> has no =
sequence<SUP>=20
</SUP>similarities in human or mouse nucleic acids and protein =
databases.<SUP>=20
</SUP>Studies are under way to determine how the presence of common<SUP> =

</SUP>DNA variants at 6p22 contributes to the risk of neuroblastic<SUP>=20
</SUP>malignant transformation and the subphenotype of high-risk =
disease.<SUP>=20
</SUP>
<P><SUP></SUP>
<P><SUP></SUP>
<P><FONT size=3D-1>Supported by the efforts of multiple investigators=20
throughout<SUP> </SUP>the Children's Oncology Group (U10-CA98543, Dr. =
Gregory=20
Reaman,<SUP> </SUP>chair); grants (R01-CA78454, to Dr. Maris; =
R01-ES009911,=20
to<SUP> </SUP>Dr. Li; and R01-CA60104, to Dr. Seeger) from the National=20
Institutes<SUP> </SUP>of Health, the Alex's Lemonade Stand Foundation =
(to Dr.=20
Maris),<SUP> </SUP>the Center for Applied Genomics at the Joseph Stokes =
Jr.=20
Research<SUP> </SUP>Institute, which funded all genomewide association=20
genotyping<SUP> </SUP>(to Dr. Hakonarson), the Abramson Family Cancer =
Research=20
Institute<SUP> </SUP>(to Dr. Maris), the Neuroblastoma Society (to Drs. =
Rahman=20
and<SUP> </SUP>Scott), and the Institute of Cancer Research (to Drs. =
Rahman<SUP>=20
</SUP>and Scott); a fellowship from the Associazione Italiana per<SUP> =
</SUP>la=20
Ricerca sul Cancro (to Dr. Capasso); and the Factors Associated<SUP> =
</SUP>with=20
Childhood Tumours Study and the Tumour and Leukaemia Bank<SUP> </SUP>of =
the=20
Childhood Cancer and Leukaemia Group. DNA was provided<SUP> </SUP>by the =
British=20
1958 Birth Cohort collection, funded by grants<SUP> </SUP>from the =
Medical=20
Research Council (G0000934) and from the Wellcome<SUP> </SUP>Trust=20
(068545/Z/02).<SUP> </SUP>
<P>No potential conflict of interest relevant to this article was<SUP>=20
</SUP>reported.<SUP> </SUP>
<P></FONT><FONT size=3D-1></FONT><BR><FONT face=3D"arial, helvetica"=20
size=3D+1><STRONG>Source Information</STRONG></FONT>
<P><FONT size=3D-1>From the Division of Oncology and the Center for =
Childhood=20
Cancer Research (J.M.M., Y.P.M., C.H., E.F.A., S.J.D., M.L., C.W., =
K.A.C.,=20
E.F.R.), the Center for Applied Genomics ( J.P.B., J.T.G., C.K., E.C.F., =
T.C.,=20
A.W.E., S.F.A.G., H.H.), and the Division of Genetics (M.C., M.D., =
S.F.A.G.,=20
H.H.), Children's Hospital of Philadelphia; and the Department of =
Pediatrics=20
(J.M.M., Y.P.M., C.H., E.F.A., S.J.D., M.L., C.W., K.A.C., E.F.R.), the =
Abramson=20
Family Cancer Research Institute, (J.M.M.), the Department of =
Biostatistics and=20
Epidemiology (S.M., M.D., H.L.), and the Department of Pediatrics (M.C., =
M.D.,=20
S.F.A.G., H.H.), University of Pennsylvania School of Medicine =97 all =
in=20
Philadelphia; the Section of Cancer Genetics, Institute of Cancer =
Research,=20
Sutton, Surrey, United Kingdom (R.H.S., N.R.); the Division of=20
Hematology=96Oncology and the Saban Research Institute, Children's =
Hospital Los=20
Angeles, and the Keck School of Medicine, University of Southern =
California =97=20
both in Los Angeles (S.A., R.C.S.); Federico II University, Centro di =
Ingegneria=20
Genetica Biotecnologie Avanzate, Naples, Italy (M.C.); the Division of=20
Reproductive and Child Health and CRUK Institute for Cancer Studies, =
University=20
of Birmingham, Birmingham, United Kingdom (C.M.); the Department of =
Statistics,=20
University of Florida, and the Children's Oncology Group =97 both in =
Gainesville=20
(W.B.L.); and the Department of Experimental Medicine, La Sapienza =
University of=20
Rome, Rome (M.D.). <SUP></SUP><BR><SUP></SUP><BR>Dr. Mosse and Mr. =
Bradfield=20
contributed equally to this article.<SUP> </SUP><BR><SUP></SUP><BR>This =
article=20
(10.1056/NEJMoa0708698) was published at www.nejm.org on May 7, 2008. It =
will=20
appear in the June 12 issue of the <I>Journal</I>. </FONT>
<P><FONT size=3D-1>Address reprint requests to Dr. Maris at the =
Children's=20
Hospital of Philadelphia, 907A, 3516 Civic Center Blvd., Philadelphia, =
PA=20
19104-4318, or at <SPAN id=3Dem0>maris{at}chop.edu</SPAN>
<SCRIPT type=3Dtext/javascript><!--=0A=
 var u =3D "maris", d =3D "chop.edu"; =
document.getElementById("em0").innerHTML =3D '<a href=3D"mailto:' + u + =
'@' + d + '">' + u + '@' + d + '<\/a>'//--></SCRIPT>
, or to Dr. Hakonarson at the Children's Hospital of Philadelphia, =
ARC12, 3516=20
Civic Center Blvd., Philadelphia, PA 19104-4318, or at <SPAN=20
id=3Dem1>hakonarson{at}chop.edu</SPAN>
<SCRIPT type=3Dtext/javascript><!--=0A=
 var u =3D "hakonarson", d =3D "chop.edu"; =
document.getElementById("em1").innerHTML =3D '<a href=3D"mailto:' + u + =
'@' + d + '">' + u + '@' + d + '<\/a>'//--></SCRIPT>
.</FONT>
<P><FONT face=3D"arial, helvetica" =
size=3D+1><STRONG>References</STRONG></FONT>
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// Parameters
// inviteurl: URL of invite form
// frmWidth & frmHeight: dimensions of invitation window
// svyName: Name of the specific survey
// expire: Number of days before cookie expires
// path: cookie path
//=20
// Created by Chris Miceli 2/25/2004
//********************************************************************

		// define variables
		var theCookie =3D document.cookie;
        var today =3D new Date();
        var expDate =3D new Date();

	   // Check if user has visited page before
	   if (readCookie(svyName) =3D=3D null) {
	=09
			createCookie(svyName, svyName, expire);

			window.open(inviteurl, "", "toolbar=3Dno,status=3Dno,width=3D" + =
frmWidth + ",height=3D" + frmHeight + ",top=3D150,left=3D50");
	   }
}

function whenIs(anyDate, n){
	//-- Returns the date that is n days from any date.
	var newDate =3D new Date();
	newDate.setTime(anyDate.getTime()+(n*1000*60*60*24));
	return newDate;
}

//********************************************************************
// Display invitation if specific cookie not found  and set cookie
// Parameters
// Display invitation every nthe hit on page, every 5th customer or =
every 163rd customer. =20
// Created by SFungafat , Modified RKumar June 2004
//********************************************************************
function intercept(surveyurl) {
	// define variables
	 var cookie_ls =3D document.cookie;
         var date_ls =3D new Date();
         var S =3D new Date();

	   // if not yet sampled
	   if (cookie_ls.indexOf("NEJM062004WEB") =3D=3D -1) {
		  rnd.today=3Dnew Date();
		  rnd.seed=3Drnd.today.getTime();
=20
                 function whenIs(anyDate, n){
                 //-- Returns the date that is n days from any date.
                    var newDate =3D new Date();
                    =
newDate.setTime(anyDate.getTime()+(n*1000*60*60*24));
                    return newDate;
                  }

		  function rnd() {
		  	rnd.seed =3D (rnd.seed*9301+49297) % 233280;
		      return rnd.seed/(233280.0);
		                 };

		  function rand(number) {
		  	return Math.ceil(rnd()*number);
		  					};  =20

		  sample=3Drand(5);  // for the sample grab 1 in 5
		  if (sample=3D=3D5) {
 	                S =3D whenIs(date_ls, 3);
	                S =3D S.toGMTString();
	   	        document.cookie =3D "NEJM062004WEB; path=3D/; expires=3D" + =
S + ";";
window.open(surveyurl, "", =
"toolbar=3Dno,status=3Dno,width=3D600,height=3D300,top=3D150,left=3D50")
		          	}
	   }
}

//************************************************
// Set pop-up cookie based on country and IP type
// Parameters
// country: two character country code
// instFlag: NEJM Institution, 1=3DTrue, 0=3DFalse
// ** Use ISO 3166 standard 2-letter country codes **
//************************************************
function intlSurvey(country, instFlag)
{

	var validCtys =3D "JP";
	if (cookiesAreEnabled())
	{
		country =3D country.toUpperCase()
	=09
		// Invite only displayed for valid countries
		if (country.indexOf(validCtys) > -1)
		{
			if (instFlag =3D=3D 1)
			{
				//Set cookie one day for NEJM Institutions
				=
invite('http://survey.nejm.org/NEJMJPN/popup.aspx',510,260,'NEJMESINST',1=
, 'nejm.org');
			}
			else
			{
				//60 days for all others
				=
invite('http://survey.nejm.org/NEJMJPN/popup.aspx',510,260,'NEJMESNONINST=
',45, 'nejm.org');
			}
	=09
		}
	}


}

//************************************************
// Set pop-up cookie based on country.=20
// Parameters
// userCty: Country user from
// validCty: Country or countries to test against
// inviteurl: URL of invite form
// svyName: Name of the specific survey
// expire: Number of days before cookie expires
// frmWidth & frmHeight: dimensions of invitation window
//************************************************
function surveyByCty(userCty, validCty, inviteurl, svyName, expire, =
frmWidth, frmHeight)
{
	if (cookiesAreEnabled())
	{
		userCty =3D userCty.toUpperCase()
		validCty =3D validCty.toUpperCase()
	=09
		// Invite only displayed for valid countries
		if (userCty.indexOf(validCty) > -1)
		{
				//Display invite
				invite(inviteurl, frmWidth, frmHeight, svyName, expire);
		}
	}
}


// Checks if cookies are enabled in browser.
function cookiesAreEnabled() {
  setCookie( "foo", "bar" );
  if ( getCookie( "foo" ) ) {
    deleteCookie( "foo" );
    return true;
  } else {
    return false;
  }
}

function setCookie( name, value, expires, path, domain, secure ) {
  document.cookie =3D name + "=3D" + escape (value) +
  ( ( expires ) ? "; expires=3D" + expires : "" ) +
  ( ( path ) ? "; path=3D" + path : "" ) +
  ( ( domain ) ? "; domain=3D" + domain : "" ) +
  ( ( secure ) ? "; secure" : "" );
}

function getCookie( name ) {
  var arg =3D name + "=3D";
  var alen =3D arg.length;
  var clen =3D document.cookie.length;
  var i =3D 0;
  while ( i < clen ) {
    var j =3D i + alen;
    if ( document.cookie.substring(i, j) =3D=3D arg ) return =
getCookieVal(j);
    i =3D document.cookie.indexOf( " ", i ) + 1;
    if ( i =3D=3D 0 ) break;
  }
  return null;
}

/**
 *   Helper function for getCookie()
 */
function getCookieVal( offset ) {
  var endstr =3D document.cookie.indexOf ( ";", offset );
  if ( endstr =3D=3D -1 ) endstr =3D document.cookie.length;
  return unescape( document.cookie.substring( offset, endstr ) );
}

function deleteCookie( name, path, domain ) {
  if ( getCookie( name ) ) {
    document.cookie =3D name + "=3D" +
    ( ( path ) ? "; path=3D" + path : "" ) +
    ( ( domain ) ? "; domain=3D" + domain : "" ) +
    "; expires=3DThu, 01-Jan-70 00:00:01 GMT";
  }
}


function createCookie(name, value, days) {
    if (days) {
        var date =3D new Date;
        date.setTime(date.getTime() + days * 24 * 60 * 60 * 1000);
        var expires =3D "; expires=3D" + date.toGMTString();
    } else {
        var expires =3D "";
    }
    document.cookie =3D name + "=3D" + value + expires + "; path=3D/"
}

function readCookie(name) {
    var nameEQ =3D name + "=3D";
    var ca =3D document.cookie.split(";");
    for (var i =3D 0; i < ca.length; i++) {
        var c =3D ca[i];
        while (c.charAt(0) =3D=3D " ") {
            c =3D c.substring(1, c.length);
        }
        if (c.indexOf(nameEQ) =3D=3D 0) {
            return c.substring(nameEQ.length, c.length);
        }
    }
    return null;
}
------=_NextPart_000_0000_01C8B0F8.49A865D0--

